In [1]: import pandas as pd In [2]: import matplotlib.pyplot as plt
For this tutorial, air quality data about \(NO_2\) is used, made available by openaq and using the py-openaq package. The air_quality_no2.csv data set provides \(NO_2\) values for the measurement stations FR04014, BETR801 and London Westminster in respectively Paris, Antwerp and London.
air_quality_no2.csv
In [3]: air_quality = pd.read_csv("data/air_quality_no2.csv", ...: index_col=0, parse_dates=True) ...: In [4]: air_quality.head() Out[4]: station_antwerp station_paris station_london datetime 2019-05-07 02:00:00 NaN NaN 23.0 2019-05-07 03:00:00 50.5 25.0 19.0 2019-05-07 04:00:00 45.0 27.7 19.0 2019-05-07 05:00:00 NaN 50.4 16.0 2019-05-07 06:00:00 NaN 61.9 NaN
Note
The usage of the index_col and parse_dates parameters of the read_csv function to define the first (0th) column as index of the resulting DataFrame and convert the dates in the column to Timestamp objects, respectively.
index_col
parse_dates
read_csv
DataFrame
Timestamp
I want a quick visual check of the data.
In [5]: air_quality.plot() Out[5]: <matplotlib.axes._subplots.AxesSubplot at 0x7f03ff3f3e90>
With a DataFrame, pandas creates by default one line plot for each of the columns with numeric data.
I want to plot only the columns of the data table with the data from Paris.
In [6]: air_quality["station_paris"].plot() Out[6]: <matplotlib.axes._subplots.AxesSubplot at 0x7f03c7021c90>
To plot a specific column, use the selection method of the subset data tutorial in combination with the plot() method. Hence, the plot() method works on both Series and DataFrame.
plot()
Series
I want to visually compare the \(N0_2\) values measured in London versus Paris.
In [7]: air_quality.plot.scatter(x="station_london", ...: y="station_paris", ...: alpha=0.5) ...: Out[7]: <matplotlib.axes._subplots.AxesSubplot at 0x7f03c4657bd0>
Apart from the default line plot when using the plot function, a number of alternatives are available to plot data. Let’s use some standard Python to get an overview of the available plot methods:
line
plot
In [8]: [method_name for method_name in dir(air_quality.plot) ...: if not method_name.startswith("_")] ...: Out[8]: ['area', 'bar', 'barh', 'box', 'density', 'hexbin', 'hist', 'kde', 'line', 'pie', 'scatter']
In many development environments as well as ipython and jupyter notebook, use the TAB button to get an overview of the available methods, for example air_quality.plot. + TAB.
air_quality.plot.
One of the options is DataFrame.plot.box(), which refers to a boxplot. The box method is applicable on the air quality example data:
DataFrame.plot.box()
box
In [9]: air_quality.plot.box() Out[9]: <matplotlib.axes._subplots.AxesSubplot at 0x7f03ff40aa50>
For an introduction to plots other than the default line plot, see the user guide section about supported plot styles.
I want each of the columns in a separate subplot.
In [10]: axs = air_quality.plot.area(figsize=(12, 4), subplots=True)
Separate subplots for each of the data columns is supported by the subplots argument of the plot functions. The builtin options available in each of the pandas plot functions that are worthwhile to have a look.
subplots
Some more formatting options are explained in the user guide section on plot formatting.
I want to further customize, extend or save the resulting plot.
In [11]: fig, axs = plt.subplots(figsize=(12, 4)); In [12]: air_quality.plot.area(ax=axs); In [13]: axs.set_ylabel("NO$_2$ concentration"); In [14]: fig.savefig("no2_concentrations.png")
Each of the plot objects created by pandas are a matplotlib object. As Matplotlib provides plenty of options to customize plots, making the link between pandas and Matplotlib explicit enables all the power of matplotlib to the plot. This strategy is applied in the previous example:
fig, axs = plt.subplots(figsize=(12, 4)) # Create an empty matplotlib Figure and Axes air_quality.plot.area(ax=axs) # Use pandas to put the area plot on the prepared Figure/Axes axs.set_ylabel("NO$_2$ concentration") # Do any matplotlib customization you like fig.savefig("no2_concentrations.png") # Save the Figure/Axes using the existing matplotlib method.
The .plot.* methods are applicable on both Series and DataFrames
.plot.*
By default, each of the columns is plotted as a different element (line, boxplot,…)
Any plot created by pandas is a Matplotlib object.
A full overview of plotting in pandas is provided in the visualization pages.